FastQCFastQC Report
Sun 21 May 2023
EGAF00007925548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558199
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG25620.4589760999213542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23160.4149057952450649No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16040.28735271829580494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15890.2846655045960311No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12960.23217526366045085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12360.2214264088613559No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12340.22106811370138607No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11130.19939125652321124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11040.197778928303347No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9860.17663951386512694No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9840.17628121870515712No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9380.168040430025851No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9060.1623077074663337No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8690.1556792470068918No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8380.1501256720273594No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7970.14278062124797788No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7440.13328579950877734No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7240.12970284790907902No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7050.12629904388936564No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6930.12414927292954664No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6170.11053405685069304No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6000.10748854799094945No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5920.10605536735107013No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5740.10283071091134165No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5640.1010392351114925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)