FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567210
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG26640.46966731898238745No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16230.28613740942508065No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15680.27644082438602985No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12920.22778159764461134No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12060.21261966467445917No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11500.20274677808924385No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11400.20098376262759823No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10570.1863507342959398No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9120.16078701010207858No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8990.15849509000193931No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8410.14826960032439485No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8040.14174644311630613No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7990.14086493538548334No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7940.1399834276546605No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7920.13963082456233142No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7230.12746601787697678No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7190.12676081169231854No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7050.1242925900460147No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6580.1160064173762804No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6150.10842545089120431No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5820.10260749986777384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)