FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567210
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG25500.44956894271962766No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22830.40249642989369017No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16640.2933657728178276No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16320.2877241233405617No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12560.22143474198268717No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12220.21544048941309216No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12170.21455898168226936No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12140.2140300770437757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11840.2087410306588389No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10340.1822957987341549No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9520.167839071948661No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9450.16660496112550907No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9190.16202112092523052No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8490.14968001269371134No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8390.14791699723206572No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8340.14703548950124293No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7770.136986301369863No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7630.1345180797235592No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7200.1269371132384831No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7140.12587930396149574No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6930.12217697149203999No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6400.11283298954531831No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5900.10401791223709031No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5730.1010207859522928No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5720.10084448440612825No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5690.10031557976763457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)