FastQCFastQC Report
Wed 31 May 2023
EGAF00007925551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542967
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG24900.4585914061075535No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16820.3097794156919297No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14510.26723539367954224No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12220.22505971817808448No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12170.22413885190076008No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11420.21032585774089402No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10800.19890711590207139No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9580.17643797873535594No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8740.16096742527630595No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8660.15949403923258687No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7970.1467860846055101No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7840.14439183228446664No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7660.14107671368609878No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7440.13702490206587142No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7420.13665655555494166No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7050.12984214510274103No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6830.12579033348251367No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6640.12229104162868093No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6470.11916009628577795No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5670.10442623584858748No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5580.10276867654940354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)