FastQCFastQC Report
Sun 21 May 2023
EGAF00007925552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45580.8394616984089273No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG23990.4418316398602493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21930.40389194923448385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14320.2637361018257095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13060.24053027163713447No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11840.218061134470419No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11510.21198341704007795No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11200.2062740461206666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10910.2009330217121851No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10210.18804089382964342No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9210.16962356828315533No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9090.16741348921757676No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8870.16336167759734938No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8470.15599474737875416No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8060.14844364390469403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7920.1458652183281857No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7170.13205222416831963No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7040.12965797184727618No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6980.1285529323144869No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6900.12707954627076784No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6130.112898205599972No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.1031370230603333No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5530.10184781027207915No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5470.10074277073928986No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5430.10000607771743034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)