FastQCFastQC Report
Wed 31 May 2023
EGAF00007925556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489478
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41070.8390571179910027No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28820.5887905074385366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23910.48847956394362974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15820.3232014513420419No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11610.23719145702156175No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10500.21451423761639948No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9550.19510580659396337No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7860.16057922930141905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7830.15996633147965794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7650.15628894454909106No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7600.15526744817948918No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6850.13994500263546064No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6780.13851490771801797No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.11788068105205954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)