FastQCFastQC Report
Sun 21 May 2023
EGAF00007925558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524978
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32990.6284072856386362No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25750.49049674462548903No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16560.3154417899416737No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14830.28248802806974765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12830.2443911935357291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11370.21658050432589557No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11110.21162791583647314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8760.16686413525900134No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8540.16267348346025928No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8440.16076864173355834No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7880.15010152806403315No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7430.141529740293879No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG7050.13429134173241544No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6550.12476713309891083No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA5390.10267096906918004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)