FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519262
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30420.5858314299910257No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23140.44563245529231876No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22930.4415882540990868No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22480.43292210868501835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17510.33720934711186257No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG16370.31525511206288925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15400.2965747541703418No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15390.29638217316114024No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG15200.29272313398631133No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14730.2836718265538399No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14270.2748131001305699No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12780.24611852975954335No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12160.2341785071890491No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9630.18545551186106435No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9150.17621162341939137No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA8380.16138288571087428No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG8060.15522029341642563No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC7710.1484799580943724No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7660.1475170530483648No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7490.14424317589193894No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG7340.14135446075391614No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7100.13673251653307963No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6450.12421475093498081No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC6260.12055571176015191No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG6140.11824473964973366No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5660.10900085120806066No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5630.10842310818045611No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5590.10765278414365002No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5400.10399374496882112No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5290.10187535386760442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)