FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546064
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61561.1273403850098156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14590.2671847988514167No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11500.21059802513991033No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11140.2040053913094436No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10640.1948489554337953No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9940.18202994520788773No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8390.15364499399337805No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8140.14906677605555393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8130.14888364733804096No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7600.1391778253098538No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6750.12361188432125172No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6730.12324562688622578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.11555422075068124No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6220.11390606229306456No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5750.10529901256995516No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5480.1003545371971051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)