FastQCFastQC Report
Sun 21 May 2023
EGAF00007925578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556314
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT67581.214781580186729No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15140.27214846291842376No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12170.21876134700906325No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11200.20132515090398587No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10880.1955730037353006No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9600.17256441506055933No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8270.148657053390711No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8040.14452269761321843No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7530.13535521306312623No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7410.13319815787486922No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7250.13032208429052658No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.12025582674532727No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6450.1159417163688133No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6150.11054907839817081No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5890.105875458823614No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5830.10479693122948551No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5670.10192085764514285No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5610.10084233005101435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)