FastQCFastQC Report
Sun 21 May 2023
EGAF00007925579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529108
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29450.5565971408483712No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26170.4946060161630518No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11860.2241508349902099No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10490.1982582005942076No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9370.1770904994821473No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8180.15459981705058323No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7950.15025287842935658No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7750.14647293180220297No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6840.12927417464865398No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6620.12511623335878497No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6590.12454924136471193No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6500.1228482653824928No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6400.12095829206891599No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6220.11755634010447771No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6030.11396539080868177No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5890.11131942816967424No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5650.10678349221708991No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5310.10035758295092873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)