FastQCFastQC Report
Sun 21 May 2023
EGAF00007925580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529108
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65941.24624840297255No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45490.8597488603460919No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12070.22811977894872126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10500.19844719792556528No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9790.1850283873991699No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8970.16953060622784008No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7990.1510088677547873No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7220.13645607324024583No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7010.13248712928173456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.13040815863680005No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6630.12530523069014265No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6530.12341525737656583No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6160.11642235611633164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.11207541749510495No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5750.1086734655306667No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5690.10753948154252062No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5310.10035758295092873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)