FastQCFastQC Report
Wed 31 May 2023
EGAF00007925581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518421
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21170.4083553714066367No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18510.3570457215274844No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14170.2733299769878149No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13350.2575127164987529No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11330.21854824553789293No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10900.21025382845216534No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8800.1697462101265188No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8620.1662741285557491No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8510.1641523009291676No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8070.15566499042284168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8050.15527920358164504No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7850.1514213351696787No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7690.14833504044010562No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7210.13907615625138642No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6430.12403046944471771No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6410.12364468260352107No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6230.12017260103275137No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6140.11843656024736653No Hit
GGAACACACGTGCAGGCCATAAGAGCACAGGTCTTTGTTGTCAT6030.11631473262078504No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5810.11207107736762208No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5600.1080203155350574No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5460.10531980764668099No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5300.1022335129171079No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5260.10146193923471464No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5220.10069036555232139No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5190.10011168529052643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)