FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518421
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41440.7993503349594249No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19470.37556348990492283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14400.2777665256615762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14270.2752589111937981No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12660.2442030704774691No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11960.2307005310355869No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9340.1801624548388279No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9090.17534011932387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8750.16878174302352722No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.16839595618233058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8400.16203047330258613No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8060.15547209700224335No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7720.1489137207019006No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7710.14872082728130226No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6500.1253807233889059No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6410.12364468260352107No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6350.12248732207993118No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6160.11882234708856315No Hit
GAAGACGGTGATATCATCCTGTACAAAAGCG6070.1170863063031783No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6040.11650762604138336No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5820.11226397078822037No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5800.11187818394702376No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5580.1076345286938608No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5490.10589848790847592No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5400.10416244712309107No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5200.10030457871112475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)