FastQCFastQC Report
Wed 31 May 2023
EGAF00007925586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522317
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA61411.1757227890342454No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44520.8523559447615147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31790.608634220214927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA27820.5326267381685835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24920.4771048998979547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19980.38252632022315947No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19090.36548685951251825No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13660.2615270037161341No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12370.23682935841644057No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12070.23108571997465138No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10250.1962409800944637No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9780.18724261320232732No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9190.17594679093347526No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.1679056971149704No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8260.1581415117639288No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8240.15775860253447618No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7950.1522064187074133No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6990.13382677569368792No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6960.133252411849509No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6940.1328695026200564No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6790.12999768339916182No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG6280.12023349804812021No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6140.11755313344195192No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5410.10357694656693157No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5250.10051367273131069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)