FastQCFastQC Report
Wed 31 May 2023
EGAF00007925591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517699
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13830.2671436491088451No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9380.18118636504996147No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7800.15066670014815559No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5660.10932993882545648No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5270.10179660381804871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)