FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517699
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14270.27564279629668975No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14020.2708137353945053No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10950.21151286751568No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10620.20513850712479648No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9880.19084448685433042No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8560.16534704529079639No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6030.11647694896068951No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5650.10913677638936911No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5330.10295557843457298No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5260.10160344138196134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)