FastQCFastQC Report
Wed 31 May 2023
EGAF00007925594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534624
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14970.2800098760998384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11400.21323397378344408No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9980.1866732507332256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7650.14309121924941642No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.1111061231818998No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5930.11091907583647571No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5780.10811336565511463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5400.10100556652899982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)