FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503888
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43460.8624932524688026No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10770.21373797351792462No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9470.18793858952783157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6650.13197377194932208No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5590.11093735115740005No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5470.10855586955831455No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5360.10637284475915282No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5170.10260216556060077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)