FastQCFastQC Report
Wed 31 May 2023
EGAF00007925598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510875
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42850.838757034499633No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10490.2053339858086616No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9370.1834108147785662No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7620.1491558600440421No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5600.10961585515047712No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5420.10609248837778322No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5370.10511377538536823No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5230.10237337900660631No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5150.10080743821874236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)