FastQCFastQC Report
Sun 21 May 2023
EGAF00007925600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences594393
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23480.3950248404675022No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16610.27944474447040935No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16610.27944474447040935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15730.2646397248958181No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15140.2547136322264899No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14820.24932998874482035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11000.18506274468239026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.1655470370613382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9570.16100458787367955No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9190.15461151123919697No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7860.13223574301850796No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6560.11036469137422546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6470.10885054164500592No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6410.10784110849219287No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6290.1058222421865668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)