FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences603624
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23390.3874928763601182No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18010.2983645448159781No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16440.27235497594529046No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15490.25661670178786794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15000.24849906564351318No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14770.24468874663697932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11950.19797092229599883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9410.15589174718036392No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9380.1553947490490769No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9010.14926510542987026No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8340.1381654804977933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6980.11563489854611479No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6630.10983658701443283No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.10155328482631572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)