FastQCFastQC Report
Wed 31 May 2023
EGAF00007925604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578639
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48950.8459505840429007No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23540.40681668535995674No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18030.3115932386168233No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16030.2770293741002594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14500.25058801774508804No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14330.24765008926118012No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10380.17938645684096646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9710.1678075622279176No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9390.16227734390526738No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8540.1475877014857277No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7960.1375641807759242No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6450.11146846306591847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6250.10801207661426208No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6160.10645670271101672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)