FastQCFastQC Report
Sun 21 May 2023
EGAF00007925605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566333
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12650.2233668177556314No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9840.17374936653876782No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8830.15591533603021543No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8360.1476163317341564No Hit
TGCCAGACCGCGGGTGGCACGTGGTTCGCGCGGCGGACGAGGCT7910.13967047655707862No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7640.13490296345083191No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7630.1347263888913413No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7580.13384351609388823No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7280.1285462793091697No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6870.12130672237005437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)