FastQCFastQC Report
Sun 21 May 2023
EGAF00007925606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566333
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19280.34043575069791093No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15660.27651576016230733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12740.22495598879104695No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10430.18416726554871427No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9390.16580351136169003No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8690.1534432921973468No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8660.15291356851887494No Hit
GAACCGCGTGTACCGCGTGAACCTCGTGAAC8500.15008837556702506No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8270.14602716069874083No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7810.13790473096217243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7470.13190119593949143No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7420.13101832314203835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7300.12889942842815091No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6780.11971755133463882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)