FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442075
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22600.5112254707911553No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6970.15766555448736072No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6860.1551772889215631No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.15427246507945483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.12848498557937002No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5550.12554430809251824No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5510.12463948425041No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4710.1065430074082452No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4620.10450715376350167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)