FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444735
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21440.48208483703778654No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.15334974760250486No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6780.152450335593106No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.14817812854846144No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5670.12749165233228776No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5390.12119576826649578No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5080.11422532519365465No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4910.11040282415370951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)