FastQCFastQC Report
Sun 21 May 2023
EGAF00007925616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457127
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23340.5105802107510604No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12890.2819785311302986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6650.145473796122303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6550.1432862202407646No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6270.1371610077724571No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6090.133223371185688No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5840.12775443148184204No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5520.12075418866091918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5390.11791034001491928No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4630.10128476331522751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)