FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434417
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45861.0556677109781614No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12140.2794549937042059No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.1392671097125573No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5770.13282168975891828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5620.12936878621232595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5410.12453472124709668No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.12430452767732386No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5230.12039123699118588No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4800.11049291349095455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)