FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460498
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22530.4892529392092908No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12860.27926288496366974No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6550.14223731699160475No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6540.14202016078245727No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6470.14050006731842485No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6160.1337682248348527No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6130.13311675620741023No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5420.11769866535793858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5360.11639572810305365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)