FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430443
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9260.2151272061573774No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7480.17377446026535454No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6180.14357301663634905No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6050.1405528722734485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.13265403317047786No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4740.11011910984729685No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4480.10407882112149576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)