FastQCFastQC Report
Wed 31 May 2023
EGAF00007925625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437849
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9580.21879689116567586No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7300.16672414462520185No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6470.1477678377705556No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6450.1473110592921304No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5690.1299534771119724No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5020.11465139808472785No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4600.10505905003779842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)