FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437849
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45871.0476214402682202No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10320.2356976948674086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9790.22359306518914054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7070.1614711921233119No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.15028011940189426No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6080.138860657441264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.12287341069638162No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.11670690123764128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4780.10917005634362531No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4680.10688616395149926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)