FastQCFastQC Report
Wed 31 May 2023
EGAF00007925632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429089
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44721.0422080267730005No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25260.5886890598453933No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20850.4859131788510076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17080.39805261845444656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14880.34678120389942413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14460.3369930247571017No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12040.28059446874657706No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11390.26544609626441135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11060.257755384081158No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10080.23491629941573894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10040.23398409187837488No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9350.21790351185884513No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9170.2137085779407069No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8520.19856020545854125No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7880.18364488486071656No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7850.18294572920769353No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7410.17269144629668903No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7380.171992290643666No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7280.1696617718002559No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7030.16383547469173063No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7010.1633693709230486No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6900.16080580019529747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6750.15731002193018231No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6510.15171677670599804No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6470.15078456916863403No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6030.14053028625762953No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5880.13703450799251438No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5860.13656840422383235No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.1333056778430582No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5530.128877692040579No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5300.12351749870073575No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4910.11442847521143631No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4560.10627165925950095No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4460.10394114041609084No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4390.10230977722570375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)