FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430402
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21640.5027857677241278No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16240.3773216667208795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15600.3624518473427168No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13590.3157513208581745No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8610.20004553882184561No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8510.1977221295440077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.19609574304952113No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7710.17913485532130427No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7600.17657910511568256No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7040.16356801315979014No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7020.16310333130422255No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.15311267140951948No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6020.13986923852584326No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5820.13522241997016743No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5490.12755516935330227No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5430.1261611237865995No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5100.11849387316973435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5040.11709982760303159No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4950.11500875925297746No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4810.11175598626400436No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4490.10432107657492298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)