FastQCFastQC Report
Wed 31 May 2023
EGAF00007925636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408573
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46771.1447158769669068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15300.37447408419058525No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13790.3375161843783118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13150.3218519089611893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8530.20877542079383613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8290.2029013175124152No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.1901740937360031No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7350.17989441299351647No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7120.17426506401548805No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6460.15811127999158045No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6070.14856586215927142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5810.1422022502710654No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5540.13559388407946685No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5460.13363584965232653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5340.13069879801161605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5340.13069879801161605No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.12531420333698018No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5060.12384567751662492No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4590.11234222525717558No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4540.1111184537402129No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4170.10206254451468892No Hit

[OK]Adapter Content

Adapter graph