FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442530
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23000.5197387747723319No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17720.40042482995503126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10880.24585903780534654No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9750.22032404582740156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6770.1529839784873342No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6220.14055544256886537No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6160.1391996022868506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.13603597496214948No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5490.12405938580435225No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.11050098298420447No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4560.10304386143312318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)