FastQCFastQC Report
Wed 31 May 2023
EGAF00007925642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443273
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21740.4904426843051573No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18420.4155452734545077No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10760.24273980143162338No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9680.21837558344406266No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6550.1477644702023358No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.14686209175835208No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6440.14528292948138055No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6340.14302698337142122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.11663241388489712No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5010.11302290010896221No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4530.10219435878115743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)