FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462313
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18500.4001617951474434No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17110.370095584593122No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15290.33072831609753567No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14720.31839900673353333No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14120.305420786350373No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11040.23879925505015No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8910.19272657268993085No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8210.1775853155762438No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC8080.17477336782655906No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6920.1496821417524491No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5490.11875071650591698No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5270.11399203569875821No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5060.10944965856465208No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4970.10750292550717805No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4870.10533988877665132No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4700.10166272633475588No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4640.10036490429643986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)