FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462313
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44490.9623350414113382No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33430.7231031790150828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23160.5009593067899886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16750.3623086523632258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15210.32899788671311425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14130.3056370900234257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9340.20202763063119578No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8540.184723336786982No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5970.12913329281244526No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5950.12870068546633992No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5930.12826807812023458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5670.12264418262086507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5550.12004853854423303No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5540.11983223487118035No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5470.11831810915981164No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5290.11442464304486355No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5120.11074748060296812No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4790.10360945939222993No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4710.10187903000780855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)