FastQCFastQC Report
Wed 31 May 2023
EGAF00007925653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464175
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18620.4011418107394841No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17170.3699035923951096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15120.3257392147358216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15000.3231539828728389No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14040.30247212796897727No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11200.2412883072117197No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8750.188506490009156No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8660.186567566111919No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC8090.17428771476275112No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7030.1514514999730705No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5860.12624548930898907No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5370.11568912586847632No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5280.1137502019712393No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5180.11159584208542037No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5030.10836430225669197No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4860.1047018904507998No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4770.10276296655356276No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4700.10125491463348954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)