FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464175
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44900.9673075887326977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33400.7195562018635213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23150.4987343135670814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16880.36365594872623475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15320.33004793450745945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13760.2964399202886842No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8980.19346151774653958No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8710.18764474605482848No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6340.13658641676091993No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6100.13141595303495449No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5790.12473743738891582No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.12322938546884257No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5660.1219367695373512No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5550.11956697366295041No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5460.11762804976571337No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5360.11547368987989443No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5290.1139656379598212No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5040.10857973824527387No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4970.10707168632520063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)