FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446234
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45281.0147142530600537No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42240.9465885611584953No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30830.6908931188569226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15690.3516092453735036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14270.3197873761300125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.30544512520336864No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9130.20460117337540393No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8570.19205170381459055No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6010.13468270010801509No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.1243742072544898No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5480.12280552355938812No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5290.11854766781554073No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5280.11832357014481192No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5140.11518620275460857No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5140.11518620275460857No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5120.11473800741315095No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4940.11070424934003235No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4720.10577410058399853No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4570.10241263552306637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)