FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412719
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44341.074338714718731No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16830.40778350403058744No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13690.33170268390842195No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9860.23890346700781886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9850.23866117140233428No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.2117663591935433No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8560.20740503829482043No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8330.2018322393686746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8280.20062076134125156No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7650.18535613819572155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7020.17009151505019152No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7020.17009151505019152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.1669416721788917No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6870.1664570809679225No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5940.14392358965785437No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.14174292920849293No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.14150063360300835No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5800.1405314511810699No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.1298704445397474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.12914355772329358No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5020.12163239395327086No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4200.1017641543035334No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4180.1012795630925642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)