FastQCFastQC Report
Sun 21 May 2023
EGAF00007925660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438173
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21360.48747868992384286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17860.4076015637659098No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15400.35145935509490545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.23118722513710338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10090.23027434369529845No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9970.2275356993698836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9450.21566824062641926No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC9370.21384247774280934No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8640.19718239142986904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8400.19170510277903935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8180.1866842548491121No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7420.16933950745481807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7330.16728552421075696No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7100.1620364559203785No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6680.15245120078142652No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.14720213249104805No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6440.14697391213059682No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.13624755518938866No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5920.13510645338713248No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5600.12780340185269287No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5520.12597763896908298No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4420.10087339931944689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)