FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420892
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43031.022352527489237No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16850.40034022979766776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14340.3407049789494692No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10070.2392537753152828No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9790.23260123737205746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9300.2209592959714131No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8460.20100168214173705No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8270.19648745996597702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8080.19197323779021697No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7730.1836575653611853No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7500.17819298062210734No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7490.17795538998127786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7030.16702622050312194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6920.1644127234539977No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6130.14564306282846906No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5940.141128840652709No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC5920.14065365937105007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.1401784780893911No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5680.13495148399114262No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5390.1280613554070878No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5350.1271109928437699No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4410.10477747260579912No Hit

[OK]Adapter Content

Adapter graph