FastQCFastQC Report
Sun 21 May 2023
EGAF00007925666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426178
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28310.664276429097701No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21540.5054226168408505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11000.25810811444983084No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7380.1731670804217956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6480.15204914378499124No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6140.14407125661108738No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6010.1410208879857712No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4720.11075184547301832No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4480.10512039570320382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)