FastQCFastQC Report
Wed 31 May 2023
EGAF00007925668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410390
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43061.0492458393235702No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26920.6559614025682887No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11200.2729111333122152No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7000.1705694583201345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6310.1537561831428641No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6160.15010112332171838No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6050.14742074611954484No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4410.10745875874168474No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4260.10380369892053899No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4200.10234167499208069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)