FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397437
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18750.47177288475909396No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17430.4385600736720537No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11360.2858314651127097No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9070.22821227012079903No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7680.19323817359732487No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6840.17210274836011744No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5860.14744475225004214No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5530.13914154947828208No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5310.1336060809637754No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4710.1185093486514844No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4680.11775451203586984No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4520.11372871675259225No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4390.11045775808492919No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4290.10794163603288069No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4270.10743841162247098No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4200.10567712618603704No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4170.10492228957042248No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4130.10391584074960307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)