FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397437
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45981.1569129195319006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43781.1015582343868335No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11410.28708952613873395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9210.23173484099366692No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9020.2269542090947748No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8660.21789616970740014No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8580.21588327206576138No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6340.15952213809987495No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6180.15549634281659735No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5470.137631876247053No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5230.13159318332213657No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4950.12454804157640079No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4780.12027063408791834No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4740.11926418526709893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4610.1159932265994359No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4450.11196743131615827No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4450.11196743131615827No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4420.11121259470054375No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4350.10945130926410977No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4270.10743841162247098No Hit

[OK]Adapter Content

Adapter graph